Accelome
Advancing Open-Source Bioinformatics Tooling
A collective of developers building high-performance, open-source bioinformatics software — with a focus on single-cell and multi-omics analysis. Our tools integrate with and extend existing community-driven ecosystems, contributing performance-oriented components, visualization systems, and reproducible workflows to the broader open-source landscape.
Our Projects
Open-source tools we support and contribute to, advancing bioinformatics with a focus on single-cell and multi-omics research.
SingleRust
A high-performance single-cell RNA-seq analysis toolkit written in Rust. Designed for speed and memory efficiency when processing large-scale single-cell datasets.
- Blazingly fast processing with Rust
- Memory-efficient sparse matrix operations
- Python bindings for easy integration
HashNSeek
A scalable tool for detecting data leakage between single-cell datasets. Helps ensure data integrity and prevent contamination in research studies.
- Data leakage detection at scale
- Cross-dataset contamination checks
- Research integrity assurance
CAUGHT
A community-driven platform to explore dataset overlaps in bioinformatics. Browse any dataset to see where it appears across studies and which publications use it.
- Explore dataset reuse across studies
- Community-curated overlap records
- Companion to HashNSeek
Muninn
A flexible visualization library for multiple data types, designed to integrate seamlessly with any frontend framework. Includes a reference backend for self-deployment.
- Multi-format data visualization
- Framework-agnostic frontend integration
- Self-hostable reference backend
HPScatter
A high-performance scatter plot visualization library for SvelteKit. Built for rendering large datasets smoothly in the browser.
- Optimized for large datasets
- Native SvelteKit integration
- More client libraries coming soon
OpenAlex SDK
A TypeScript SDK for the OpenAlex API, providing fully typed access to the open catalog of scholarly works, authors, institutions, and more.
- Typed access to the OpenAlex API
- Query works, authors, and institutions
- Simplifies bibliometric analysis
Tech Stack
Tools and frameworks from the open-source bioinformatics ecosystem that power our projects.
nf-core
Nextflow PipelinesCommunity-curated Nextflow pipelines for reproducible bioinformatics analysis.
Bioconductor
R/BioinformaticsOpen source software for bioinformatics with comprehensive R packages for genomic data analysis.
Seurat
Single-Cell AnalysisR toolkit for single-cell genomics, enabling QC, analysis, and exploration of scRNA-seq data.
Scanpy
Python Single-CellScalable Python toolkit for analyzing single-cell gene expression data at scale.
Nextflow
Workflow EngineData-driven computational pipelines with seamless parallelization and cloud deployment.
Snakemake
Workflow ManagementPython-based workflow management for reproducible and scalable data analysis.
Kuva
Rust PlottingA Rust plotting library used in SingleRust for high-performance scientific visualizations.
Sprocket
WDL WorkflowsDistributed WDL workflow engine for scalable and reproducible bioinformatics pipelines.
Planetary
Task ExecutionTask execution service for Kubernetes, used alongside Sprocket for distributed workflow orchestration.
Get In Touch
Interested in collaborating or have questions about our projects? Reach out!