Accelome
Advancing Open-Source Single-Cell Tooling
Building high-performance, open-source software for single-cell and multi-omics research — empowering researchers with reproducible, accessible tools.
Our Projects
Open-source tools we support and contribute to, to accelerate single-cell and multi-omics research
SingleRust
A high-performance single-cell RNA-seq analysis toolkit written in Rust. Designed for speed and memory efficiency when processing large-scale single-cell datasets.
- Blazingly fast processing with Rust
- Memory-efficient sparse matrix operations
- Python bindings for easy integration
HashNSeek
A scalable tool for detecting data leakage between single-cell datasets. Helps ensure data integrity and prevent contamination in research studies.
- Data leakage detection at scale
- Cross-dataset contamination checks
- Research integrity assurance
Muninn
A flexible visualization library for multiple data types, designed to integrate seamlessly with any frontend framework. Includes a reference backend for self-deployment.
- Multi-format data visualization
- Framework-agnostic frontend integration
- Self-hostable reference backend
HPScatter
A high-performance scatter plot visualization library for SvelteKit. Built for rendering large datasets smoothly in the browser.
- Optimized for large datasets
- Native SvelteKit integration
- More client libraries coming soon
Tech Stack
Tools and frameworks from the open-source bioinformatics ecosystem that power our projects.
nf-core
Nextflow PipelinesCommunity-curated Nextflow pipelines for reproducible bioinformatics analysis.
Bioconductor
R/BioinformaticsOpen source software for bioinformatics with comprehensive R packages for genomic data analysis.
Seurat
Single-Cell AnalysisR toolkit for single-cell genomics, enabling QC, analysis, and exploration of scRNA-seq data.
Scanpy
Python Single-CellScalable Python toolkit for analyzing single-cell gene expression data at scale.
Nextflow
Workflow EngineData-driven computational pipelines with seamless parallelization and cloud deployment.
Snakemake
Workflow ManagementPython-based workflow management for reproducible and scalable data analysis.
Get In Touch
Interested in collaborating or have questions about our projects? Reach out!